The system of three-dimensional hydrodynamic-environmental models could simulate full advection and dispersion processes of the dissolved and particulate matter as suspended sediment and all oil phases in the realistic marine conditions. The hydrodynamic model provides temperature, salinity and current structure and water level. These variables will be used in the environmental model simulating the advection and diffusion processes for suspended matter concentration, bottom sediment thickness and all oil spill phases in the water and bottom sediment. This model includes two-dimensional (2D) sub-model for surface oil slick, dissolved and particulate oil, the thickness change in the bottom sediment layer.