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báo cáo khoa học: " PHENOPSIS DB: an Information System for Arabidopsis thaliana phenotypic data in an environmental context"

Tuyển tập báo cáo các nghiên cứu khoa học quốc tế ngành y học dành cho các bạn tham khảo đề tài: PHENOPSIS DB: an Information System for Arabidopsis thaliana phenotypic data in an environmental context | Fabre et al. BMC Plant Biology 2011 11 77 http www.biomedcentral.com 1471-2229 11 77 BMC Plant Biology DATABASE Open Access PHENOPSIS DB an Information System for Arabidopsis thaliana phenotypic data in an environmental context 1 1 1 1 2 2 2 Juliette Fabre Myriam Dauzat Vincent Nègre Nathalie Wuyts Anne Tireau Emilie Gennari Pascal Neveu Sébastien Tisné1 3 Catherine Massonnet1 Irène Hummel1 4 and Christine Granier1 Abstract Background Renewed interest in plant X environment interactions has risen in the post-genomic era. In this context high-throughput phenotyping platforms have been developed to create reproducible environmental scenarios in which the phenotypic responses of multiple genotypes can be analysed in a reproducible way. These platforms benefit hugely from the development of suitable databases for storage sharing and analysis of the large amount of data collected. In the model plant Arabidopsis thaliana most databases available to the scientific community contain data related to genetic and molecular biology and are characterised by an inadequacy in the description of plant developmental stages and experimental metadata such as environmental conditions. Our goal was to develop a comprehensive information system for sharing of the data collected in PHENOPSIS an automated platform for Arabidopsis thaliana phenotyping with the scientific community. Description PHENOPSIS DB is a publicly available URL http bioweb.supagro.inra.fr phenopsis information system developed for storage browsing and sharing of online data generated by the PHENOPSIS platform and offline data collected by experimenters and experimental metadata. It provides modules coupled to a Web interface for i the visualisation of environmental data of an experiment ii the visualisation and statistical analysis of phenotypic data and iii the analysis of Arabidopsis thaliana plant images. Conclusions Firstly data stored in the PHENOPSIS DB are of interest to the Arabidopsis thaliana community .